CROPaware is a web based tool developed by the Software Development Group at Genetwister that integrates different type of data formats and sources used by breeders to support their decisions in the new development of crop varieties. Sequence data, marker calling data, genotypes, and annotations are examples of data sources that the user can explore in CROPaware.

 

The platform also offers a set of data analysis features which allow users to compare reference genomes, search for genetic variances between group of samples, genome-wide association analysis and others.

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Other innovations

Haplotype discovery
Haplotype discovery

Haplotype discovery

Acceleration and cost reduction in plant breeding with improved genotype/phenotype relations, utilizing linked variants.

14 Mar. 2021 View project
Semantic Web
Semantic Web

Semantic Web

To interconnect different knowledge domains, we use different semantic web technologies.

14 Mar. 2021 View project
Marker discovery
Marker discovery

Marker discovery

Discovery of markers in all plant species by next-generation sequencing for accelerated plant breeding

28 Feb. 2021 View project
Genotyping array design
Genotyping array design

Genotyping array design

Tailored marker selection allowing for genotyping regardless of species, genome size and ploidy level.

14 Mar. 2021 View project
Genomic Selection
Genomic Selection

Genomic Selection

Genomic selection (GS) accelerates achieving genetic gain through shorter breeding cycles and is an alternative to marker-assisted selection. Genetwister implements new breeding schemes and methods that integrate GS for crop improvement.

14 Mar. 2021 View project
Association analysis
Association analysis

Association analysis

Advanced statistical models are needed to increase the power to discover (new) associations between genetic and phenotypic variation.

1 Mar. 2021 View project
Long Read Sequencing
Long Read Sequencing

Long Read Sequencing

Using state-of-the-art long read sequencing technologies, Genetwister builds high quality genome assemblies of novel species and obtains long-range genomic information such as haplotypes and structural variants.

14 Mar. 2021 View project