The availability of a high-quality reference genome accelerates breeding programs. A reference genome assembled to large scaffolds or even full-length chromosomes reveals the genome architecture as well as locations of specific genes and markers. Insight into gene order allows QTL analyses to be performed without the need of a physical map. Additionally, questions involving structural variant detection can be answered, facilitating prediction of recombination frequencies along the genome. Finally, a good reference genome is a valuable addition to breeding programs involving commercial varieties that lack specific traits that are available in wild germplasm. Back-crossing the genomic regions responsible for these interesting traits is enabled by the availability of a high-quality genome assembly.

Genetwister applies the most recent NGS technologies to construct high-quality reference genomes. These technologies involve long read sequencing combined with genome mapping and chromatin conformation capture data such as Hi-C.

Want to know more about this project?

Contact us for more details.

Other innovations

Lab automation
Lab automation

Lab automation

With increasing sample numbers comes the need for automating the most valuable and applied protocols at Genetwister.

14 Mar. 2018 View project
Genotyping array design
Genotyping array design

Genotyping array design

Tailored marker selection allowing for genotyping regardless of species, genome size and ploidy level.

14 Mar. 2018 View project
Association analysis
Association analysis

Association analysis

Advanced statistical models are needed to increase the power to discover (new) associations between genetic and phenotypic variation

1 Aug. 2018 View project
High Molecular Weight DNA isolation
High Molecular Weight DNA isolation

High Molecular Weight DNA isolation

With the increasing demands for DNA molecule size and purity on the newest long read sequencing platforms, comes the need for developing new protocols for DNA isolation from different biological sources in the laboratory at Genetwister.

14 Mar. 2018 View project
CROPaware
CROPaware

CROPaware

CROPaware – A web based software platform for breeding and genomics data management.

23 Apr. 2018 View project
Haplotype discovery
Haplotype discovery

Haplotype discovery

Acceleration and cost reduction in plant breeding with improved genotype/phenotype relations, utilizing linked variants.

14 Mar. 2018 View project
High-throughput sequencing and genotyping
High-throughput sequencing and genotyping

High-throughput sequencing and ...

With increasing sample numbers and marker panel sizes, it is valuable to increase the throughput of sequencing and genotyping procedures. Genetwister develops cost-effective methods and applies available methods for allowing high-throughput genomics.

4 Apr. 2018 View project
Experimental Design
Experimental Design

Experimental Design

Appropriate experimental design and data analysis of breeding trials are essential. Genetwister offers assistance in the designing of experiments, taking into account the breeding program’s practical considerations.

1 Aug. 2018 View project