Sequence alignment is a commonly used tool in bioinformatics for different applications. In order to increase the performance of these tools (e.g. BLAST and the different versions of it) in terms of execution time, the Software Development Group at Genetwister created a BLAST based implementation which can run in a Spark cluster using HDFS as file system support.

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Other innovations

Genomic Selection
Genomic Selection

Genomic Selection

Genomic selection (GS) is an alternative to marker-assisted selection, which can accelerate the genetic gain through shorter breeding cycles. Genetwister is implementing new breeding schemes and methods that integrate GS for crop improvement.

14 Mar. 2018 View project
CROPaware
CROPaware

CROPaware

CROPaware – A web based software platform for breeding and genomics data management.

23 Apr. 2018 View project
Lab automation
Lab automation

Lab automation

With increasing sample numbers comes the need for automating the most valuable and applied protocols at Genetwister.

14 Mar. 2018 View project
Long Read Sequencing
Long Read Sequencing

Long Read Sequencing

Using the state-of-the-art technologies such as long read sequencing technologies, Genetwister is able to build high quality genome assemblies of novel species, and obtain long range genomic information such as haplotypes and structural variants.

14 Mar. 2018 View project
Association analysis
Association analysis

Association analysis

Advanced statistical models are needed to increase the power to discover (new) associations between genetic and phenotypic variation

1 Aug. 2018 View project
Genotyping array design
Genotyping array design

Genotyping array design

Tailored marker selection allowing for genotyping regardless of species, genome size and ploidy level.

14 Mar. 2018 View project
High Molecular Weight DNA isolation
High Molecular Weight DNA isolation

High Molecular Weight DNA isolation

With the increasing demands for DNA molecule size and purity on the newest long read sequencing platforms, comes the need for developing new protocols for DNA isolation from different biological sources in the laboratory at Genetwister.

14 Mar. 2018 View project
High-throughput sequencing and genotyping
High-throughput sequencing and genotyping

High-throughput sequencing and ...

With increasing sample numbers and marker panel sizes, it is valuable to increase the throughput of sequencing and genotyping procedures. Genetwister develops cost-effective methods and applies available methods for allowing high-throughput genomics.

4 Apr. 2018 View project