Sequence alignment is a commonly used tool in bioinformatics for different applications. In order to increase the performance of these tools (e.g. BLAST and the different versions of it) in terms of execution time, the Software Development Group at Genetwister created a BLAST based implementation which can run in a Spark cluster using HDFS as file system support.

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Other innovations

Haplotype discovery
Haplotype discovery

Haplotype discovery

Acceleration and cost reduction in plant breeding with improved genotype/phenotype relations, utilizing linked variants.

14 Mar. 2018 View project
Genomic Selection
Genomic Selection

Genomic Selection

Genomic selection (GS) is an alternative to marker-assisted selection, which can accelerate the genetic gain through shorter breeding cycles. Genetwister is implementing new breeding schemes and methods that integrate GS for crop improvement.

14 Mar. 2018 View project
CROPaware
CROPaware

CROPaware

CROPaware – A web based software platform for breeding and genomics data management.

23 Apr. 2018 View project
High-throughput sequencing and genotyping
High-throughput sequencing and genotyping

High-throughput sequencing and ...

With increasing sample numbers and marker panel sizes, it is valuable to increase the throughput of sequencing and genotyping procedures. Genetwister develops cost-effective methods and applies available methods for allowing high-throughput genomics.

4 Apr. 2018 View project
Marker discovery
Marker discovery

Marker discovery

Discovery of markers in all plant species by next-generation sequencing for accelerated plant breeding

28 May. 2018 View project
Association analysis
Association analysis

Association analysis

Advanced statistical models are needed to increase the power to discover (new) associations between genetic and phenotypic variation

1 Aug. 2018 View project
Lab automation
Lab automation

Lab automation

With increasing sample numbers comes the need for automating the most valuable and applied protocols at Genetwister.

14 Mar. 2018 View project